Datasets
These datasets may contain unpublished information, and must not be used or dispered without prior approval. Please contact Nitin Gupta at ngupta@ucsd.edu for permission.
Acronyms
used: SOne = Shewanella oneidensis MR-1 | SPut =
Shewanella putrefaciens CN-32 | SFri = Shewanella frigidimarina
Genome
Sequences: SOne
| SPut
| SFri
Protein
Sequences: SOne
| SPut
| SFri
All
Identified Peptides: SOne
| SPut
| SFri
Peptides
Mapping to Proteins: SOne
| SPut
| SFri
Summary
of Proteins: SOne
| SPut
| SFri
Gene
Coordinates: SOne
| SPut
| SFri
Signal
Peptide Results: SOne
| SPut
| SFri
N-terminal
Methionine Cleavage Results: SOne
| SPut
| SFri
Post translational
modifications: SOne
| SPut
| SFri
Doubly-confirmed
cleavages: SOne
| SPut
| SFri
Data
for determining orthologs: List
of orthologs | Alignments
Supported
By 
Whats New
Comparative proteogenomics paper accepted
The
paper including results of all students on
using comparative approaches for analyzing MS/MS data will appear in
Genome Research. The paper is also covered in research highlights
of Nature
Reviews Genetics!
Trypsin paper accepted
"Does Trypsin cut Before Proline?" paper with our undergraduate student Jesse Rodriguez as the first author has been accepted for publication in the Journal of Proteome Research. Congratualtions Jesse!
Consortium alumni
Jesse Rodriguez joins Stanford, Noah Ollikainen joins UCSF and Ian Kerman joins UCSD for graduate studies. Congratulations to all!
Poster at ASMS
Jesse Rodriguez presented a poster on his work on analyzing trypsin specificity at ASMS 2007 in Indianapolis to thousands of mass-spectrometry experts.
HHMI site visit
Mary
Koszalka from HHMI visited us, and learnt about the consortium projects
through presentations made by Jamal Benhamida, Jesse Rodriguez and
Nitin Gupta.
Collaborators
University of California,
San Diego
Pacific Northwest National
Laboratory
Burnham Institute
Howard Hughes Medical
Institute